When a foal comes out not looking like one or both parents, the DNA and genes do not just disappear and go away. They may be recessive, but are STILL THERE.
I will use a human example- and I have seen this to be true myself. If you have an Oriental parent and a Caucasian parent, and they have children, one may come out looking exactly like the Oriental, one may pick up traits from both, and one may look like the Caucasian parent. This does not mean that the Oriental looking child can deny that the other parent is Caucasian and CAN produce children with those features. Same for the one that came out with the Caucasian traits, and didnt pick up any from the other parent.
I have a Hispanic friend with two daughters. One looks more Hispanic than even the mother. The other daughter has blonde hair, green eyes and built completely different. People laugh and think they are kidding when introduced as mother and daughter. This does not mean she can deny that she carries Hispanic blood, and those traits can be passed on.
My mother did not particularly favor either parent, but looks EXACTLY like her Grandmother.
The DNA and genes are still there. Mendel's Laws of Inheritance is interesting in that it breaks down the experiments done and the results of crossing one type with another type. The first generation may appear as one thing, but depending on what that one is crossed with, F2 and F3 will have different results. It explains why colors and types CAN skip a generation or two, depending on what is crossed with what.
It explains why two blue eyed parents can have a brown eyed child. Just because the coloring is not visible, does not mean the genes have completely disappeared and you can deny they're in there. I look like my fathers side of the family completely. Does that mean I carry none of my mother's genes?
Little Wee Horse... I agree!!! And I thought I was the only one who was nuts and think that eye color, face markings and leg markings are also supported by their own gene pools. Just like people- one thing makes up eye color, another makes up hair color, or the shape of your toes or how tall you are or what pigmentation of skin you may have.